Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890881.1_cds_XP_016445583.1_40529
CDS Infomation

[gene=LOC107770763] [db_xref=GeneID:107770763] [protein=ALG-2 interacting protein X-like] [protein_id=XP_016445583.1] [location=join(28180..28552,29674..29981,30891..31844,32402..32491,33230..33298,34571..34711,35679..35727,36918..37021,38068..38610)] [gbkey=CDS]
Sequence

ATGGCGGCACCGTCGTCAACAACCAACGTGATGCTCTCAATCTCCGAGAAAAAAACAGTA
TCAGTCGATCTCTACCGTCCACTCCGAAATTACATAATCTACAACTACTCCGAACGTGAA
GCTCAAAATATCGAAGATGATTTACAAACCCTTAAGGAATATCGTTCCGACATCGAACGT
GCGGGTTCCACTGATTCATCATCGTCTCTTCCTGCTCGCCGTGACCTTTTGCAGAATTAC
TATAAAGCCCTTTGCGCTGTTGAGTCTCGGTTCCCTATTTCGCCTGATCAAGACCATATT
AATTCTGTTACTTTTACTTGGTTCGATGCTTTCAAGAACAAAAACAAAGCTGCTCAGCAG
AATATTCATTTAGAAAAAGCTGCAGTTTTGTTCAATCTTGGGGCAGTGCACAGTCAGATG
GGGTTAGGTTTTGATCGTTCATCAGTTGAGGGGCGAAGGCAAGCATCACATTCCTTTATT
GCTGCTGCTGGGGCATTTGCCTTCTTGAGAGACAATGTGGCAATGAAGGCATCAATGGGT
AGCTCCACCACTGTTGATGTCTCAGTCGAATGTGCTGGGATGCTGGAAAGACTTATGTTG
GCTCAGGCGCAGGAGTGTGTTTTTGAGAATAGCATTGCCAAGGGAAACACTCCTGGTGTC
TGTGCAAAGATTTCAAGACAGGTTGGATTGTTTTATGAGGAAGCTTTGGCAGCATTAAGT
GTTGCACCTCTGAACCAGCACTTTGACAAGGCTTGGCTAGCTCACGTTCAACTTAAGGCA
GCACTATTTTATGCCGAGGCCTGTTATAGGTACAGTCTAGAGCTCCATGAGAAAGAAGAA
ATTGCTGAGGAAATTGCGAGGTTGAAGAGCGGGGTCAATGCCTTGTCTGAGGCAAGAAAA
ACATCTCCAAGGGGAGCAGCACAGCAGCTCTTGGATGCAATGAATAAGCTAGAAGCTAGT
TTAAATCTAAACTTGGAGAAGGCTATGAAGGAAAATGATAGAGTCTACCTCATGAGGGTT
CCACCAGCCAGTTCTCTGTCACCACTTCCAGCATTTTCCTTGGTCAAGCCTATGCAGATG
AATGATGTTCTGGATGCTAGCAAGGAGAAGATGTTTGCAAGTCTTGTCCCAGACAACAGT
GCTAAAGCTCTTTCTAGGTACACTGAGATGGTTGATGACGTCATCAGGACTCAAGCCGAG
AAGTTACAACAGGGGAGCGAGCTAGCTCGAGTGAGGCTTAGAGAAATGGACTTGCCTGAT
TCTATTCTTGCCTTGGATGGGAATTTATCTCTACCTTTGGCCTTAAAAGAAGATGTAGAG
GCAGTGCAAATTTGTGGTGGTCCAGCTGGTTTGGATGCTGAGCTGCAGCAACTCAGAGAT
TTGAAGAGGGTGAACCAGGAGTTGCTGGTCCAGACCGAGGAACATTTGCAAAAAGAAGCA
ACAGAAGATGCACAATTTAGAACTCAATTTGGAACACGATGGACAAGGCCTCAATCTACT
ACCTTAACAAAGAACTTGCTGGACAGGTTAAATAGGTTTGCAGCTAACCTGAAGCAAGCT
GCAGAAAGTGATGCCAGGATTGAGCGATCAGTAAGGGATCATGCAGCACTCATGTCAATC
CTTGACCGCCATCCAATCGAATCTGCTCTTCCAACCTTGGAAAGACCAATAATGTCTTTG
GACGCCACTGAAGATGCCATTGTGGGGGCTCTGAAGCAGAGCTTGAGGCATTTAGAAACG
CTTGGTGCTCAGCGGGCTGGACTGGAAGATATGCTGAAAGAGATGAAGAGGAAGGATGAT
ATACTTCCGAAATTGATGACATCCACTGGCTCCCATGAGGATCTTTTCAGGAAGGAGATT
GCAAAATATGATCATATTTGTGAAGAAATTGCTCGAAACCTTGAGGCACAAGAACAATTG
TTGCTGCAGATTCAGGCTCATAATGAGGAGTTTGCTTCTATTTTCAGTCTTGAGGATTAT
AAAGCTAATCGCGAGAGAATCTATAATCAGATTGAAGCTGCCATTTCAAAATATCGAGAA
ATCAAGGACAATATCAATGAGGGATTGAAGTTCTACGTAACACTTCAGGAGGCGATCACT
AATGTAAAACAGCAGTGTAGTGATTTTGTGATGACAAGAAGCATACAGTGCCGAGAAATG
ATAGAAGAGGTACAGAGGCAAATCTCAGGTCTCAGTTTCCAGGACAGTAAAAGTTCAAGT
GGTTATGCCTATCCTTCAGTTGGGCAGCCTCAACAGGCTCCAAGAGCCAATCCCCAACTG
CCTGCCGATACTGGAAATATACCCAATCATCCTCGACCCCAAAATCCTACATACCAGCCT
CCCCAACAACCAACAATGCCTGGATATAGTCAAACTTCTCCTTATGGTTCTCCACAACCG
CCTGCACCACCTTACAATTTTCCGGGTCAAGGTCAACCATATCCGCATCCTCAGCATCAA
CAACAGCCTCCACAAAGCCACGAGTATGGCCAACCTGCATATCCTGGGTGGCGGGGTCCA
TACTATAATGCACCTCCACAACAACCCGGGGCTATGCCTCGGCCTCCTTACACTGCCCCT
TCACCATATCCTCATCCTCCTCCCCATCAGAGTGGCTATTACAGGCAATAA

Peptide Sequence

PEP ID

XP_016445583.1
PEP Infomation

PREDICTED: ALG-2 interacting protein X-like [Nicotiana tabacum]
Sequence

MAAPSSTTNVMLSISEKKTVSVDLYRPLRNYIIYNYSEREAQNIEDDLQTLKEYRSDIER
AGSTDSSSSLPARRDLLQNYYKALCAVESRFPISPDQDHINSVTFTWFDAFKNKNKAAQQ
NIHLEKAAVLFNLGAVHSQMGLGFDRSSVEGRRQASHSFIAAAGAFAFLRDNVAMKASMG
SSTTVDVSVECAGMLERLMLAQAQECVFENSIAKGNTPGVCAKISRQVGLFYEEALAALS
VAPLNQHFDKAWLAHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGVNALSEARK
TSPRGAAQQLLDAMNKLEASLNLNLEKAMKENDRVYLMRVPPASSLSPLPAFSLVKPMQM
NDVLDASKEKMFASLVPDNSAKALSRYTEMVDDVIRTQAEKLQQGSELARVRLREMDLPD
SILALDGNLSLPLALKEDVEAVQICGGPAGLDAELQQLRDLKRVNQELLVQTEEHLQKEA
TEDAQFRTQFGTRWTRPQSTTLTKNLLDRLNRFAANLKQAAESDARIERSVRDHAALMSI
LDRHPIESALPTLERPIMSLDATEDAIVGALKQSLRHLETLGAQRAGLEDMLKEMKRKDD
ILPKLMTSTGSHEDLFRKEIAKYDHICEEIARNLEAQEQLLLQIQAHNEEFASIFSLEDY
KANRERIYNQIEAAISKYREIKDNINEGLKFYVTLQEAITNVKQQCSDFVMTRSIQCREM
IEEVQRQISGLSFQDSKSSSGYAYPSVGQPQQAPRANPQLPADTGNIPNHPRPQNPTYQP
PQQPTMPGYSQTSPYGSPQPPAPPYNFPGQGQPYPHPQHQQQPPQSHEYGQPAYPGWRGP
YYNAPPQQPGAMPRPPYTAPSPYPHPPPHQSGYYRQ

Transcript Sequence

Gene sequence data has not been registered.